Index

A

add() (treem.Tree method) add_rotation() (treem.commands.render.InteractionMatrix method) add_translation() (treem.commands.render.InteractionMatrix method) angle_between() (in module treem.utils.geom)

App (class in treem.commands.render) apply() (treem.commands.render.MouseInteractor method) area() (treem.Morph method) (treem.Node method) ascendorder() (treem.Tree method)

B

breadth() (treem.Tree method)

C

check() (in module treem.commands.check) cli() (in module treem.cli) convert() (in module treem.commands.convert)

coord() (treem.Node method) coords() (treem.Morph method) copy() (treem.Morph method)

D

default() (treem.io.TreemEncoder method) degree() (treem.Tree method) delete() (treem.Morph method)

depth() (treem.Tree method) diam() (treem.Node method) display() (treem.commands.render.App method) dist() (treem.Node method)

F

fibonacci_sphere() (in module treem.utils.geom)

find() (in module treem.commands.find) forks() (treem.Tree method)

G

genlist_lines() (treem.commands.render.App method) genlist_nodes() (treem.commands.render.App method) genlist_points() (treem.commands.render.App method)

genlist_segments() (treem.commands.render.App method) get_current_matrix() (treem.commands.render.InteractionMatrix method) get_morphometry() (in module treem.commands.measure) graft() (treem.Morph method)

H

height() (treem.Tree method)

I

ident() (treem.Node method) insert() (treem.Morph method) InteractionMatrix (class in treem.commands.render)

is_fork() (treem.Tree method) is_leaf() (treem.Tree method) is_root() (treem.Tree method) is_stem() (treem.Node method)

K

keyboard() (treem.commands.render.App method)

L

leaves() (treem.Tree method) length() (treem.Morph method) (treem.Node method)

level() (treem.Tree method) levelorder() (treem.Tree method) load() (treem.Morph method) load_swc() (in module treem.io)

M

measure() (in module treem.commands.measure) modify() (in module treem.commands.modify) module treem treem.cli treem.commands.check treem.commands.convert treem.commands.find treem.commands.measure treem.commands.modify treem.commands.render treem.commands.repair treem.commands.view treem.io treem.utils treem.utils.geom treem.utils.plot

Morph (class in treem) mouse_button() (treem.commands.render.MouseInteractor method) mouse_motion() (treem.commands.render.MouseInteractor method) MouseInteractor (class in treem.commands.render) move() (treem.Morph method)

N

Node (class in treem)

node() (treem.Morph method) norm() (in module treem.utils.geom)

O

order() (treem.Node method)

P

parent_ident() (treem.Node method) plot_neuron() (in module treem.utils.plot) plot_points() (in module treem.utils.plot) plot_section() (in module treem.utils.plot) plot_tree() (in module treem.utils.plot)

point() (treem.Node method) points() (treem.Morph method) postorder() (treem.Tree method) preorder() (treem.Tree method) prune() (treem.Morph method)

R

radii() (treem.Morph method) radius() (treem.Node method) render() (in module treem.commands.render) repair() (in module treem.commands.repair) repair_branch() (in module treem.utils.geom)

reset() (treem.commands.render.InteractionMatrix method) rotate() (treem.Morph method) rotation() (in module treem.utils.geom) rotation_matrix() (in module treem.utils.geom) run() (treem.commands.render.App method)

S

sample() (in module treem.utils.geom) save() (treem.Morph method) save_swc() (in module treem.io) section() (treem.Node method)

sections() (treem.Node method) set_nrncolor() (treem.commands.render.App method) size() (treem.Tree method) stems() (treem.Morph method) SWC (class in treem.io)

T

translate() (treem.Morph method) Tree (class in treem) treem module treem.cli module treem.commands.check module treem.commands.convert module treem.commands.find module treem.commands.measure module treem.commands.modify module

treem.commands.render module treem.commands.repair module treem.commands.view module treem.io module treem.utils module treem.utils.geom module treem.utils.plot module TreemEncoder (class in treem.io) type() (treem.Node method)

V

view() (in module treem.commands.view)

volume() (treem.Morph method) (treem.Node method)

W

walk() (treem.Node method)

width() (treem.Tree method) write_img() (treem.commands.render.App method)